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RNA purification from saliva for biodosimetry applications

A Alghali, K AlAnazi, K AlGhadam
Published in : HAMDAN MEDICAL JOURNAL ; Vol 8, No 4 (2015): Supplement Issue
DOI : 10.7707/hmj.520

Abstract


Introduction: The work presented here is to assess the possibility of using saliva instead of blood samples to produce a less invasive method of collecting RNA. This can be used to measure gene expression and then used in a biodosimetry device to rapidly measure expression levels of a low-density gene set that can define radiation exposure, dose and injury in a public health emergency.

Objectives: Assess the possibility of using saliva instead of blood to produce a less invasive method of collecting purified RNA for biodosimetry studies.

Materials and methods: Saliva (200μl) was collected from a donor and immediately mixed with RNAprotect saliva reagent to stabilize the salivary RNA. Three types of sample were prepared: (i) saliva mixed with RNAprotect just before RNA extraction, (ii) saliva mixed with RNAprotect and incubated for 24 hours before RNA extraction and (iii) saliva in culture for 24hours (37°C; 5% CO2 ) then stabilized with RNAprotect. Total RNA was purified from stabilized saliva using the RNeasy Micro Kit (Qiagen, Hilden, Germany). RNA concentration was determined by using Epoch Instrument Spectrophotometer (BioTek Instruments, Winooski, VT, USA). RNA quality was determined by RNA 6000 Pico Assay Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). Gene expression analysis was performed by chemical ligation-dependent probe amplification (CLPA).

Results: Using gel electrophoresis on our saliva samples we found the two ribosomal subunits (28S, 18S) which are required to perform CLPA (Figure 1).

Conclusions: We have shown that it is possible to purify RNA from saliva as demonstrated in our samples. Although we did not get enough RNA to be able to detect a signal with the CLPA we believe that once the protocol for RNA purification is optimized we will be able to run these samples with CLPA for better gene expression analysis.

Acknowledgements: This study was conducted at The University of Arizona College of Medicine Centre for Applied NanoBioscience and Medicine, Phoenix, AZ, USA, sponsored by Al-Imam Muhammad ibn Saud University summer research programmes.

 


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